scCoAnnotate听is a听Snakemake听pipeline for听efficient reference-based consensus prediction听of cell-types in single-cell RNA sequencing (scRNA-seq) data.听Developed by the听, the pipeline allows听users to run听multiple annotation tools to predict cell type labels of multiple听scRNA-seq samples.听The tools consist of several statistical models and machine learning approaches used in the single-cell field.听It then outputs a consensus of the predictions,听which has been found to increase accuracy in benchmarking experiments by combining the strengths of the different approaches.听The automated pipeline is user-friendly and running it does not require knowledge of machine learning.听It also features parallelization options to exploit听available computational resources for maximal efficiency.听
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